Please follow below steps to rerun the payroll.

  1. Please download the HMRC response for the submitted FPS and delete the payroll (refer attached).
  2. You have to rerun the payroll for the employee with the late reason (refer attached).
  3. You have to select the same pay date while running the payroll.
  4. Submit the FPS to the HMRC.

Please refer below screenshots for more help.

Click here to watch how to restore a deleted employee